Aspergillus oryzae RIB 40 Genome DB

AO080527000391

 gene name
  
 product   Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1
 CDS
  304 amino acids,   molecular mass 33554 Da show
  915 nucleotides show
  with 2000-b promoter, 1000-b terminator region and intorn
 show
 contig
  SC020 complement(1013949..1014863) genbank
 Dogan ID
  AO090020000406 transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Aspergillus oryzae Ace36] alignment
 paralogs  none

 motif
 IPR001222 Transcription factor TFIIS
 IPR003617 Transcription elongation factor S-II, N-terminal sub-type
 IPR003618 Transcription elongation factor S-II, central region
 IPR006289 Transcription elongation factor S-II
 IPR013138 Zinc finger TFIIS-type 2
 IPR014823 Transcription elongation factor S-II, N-terminal
 detail
 localization
  82.6 %: nuclear
  13.0 %: mitochondrial
  4.3 %: peroxisomal
 		detail
 homologs  
  1
 AO090020000406 transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Aspegillus oryzae Ace36] Expect = 0.0
 alignment
  2
 ref|XP_001400379.1| hypothetical protein An02g12503 [Aspergillus niger] >gnl|BL_ORD_ID|3499 unnamedprotein product [Aspergillus niger] Expect = 0.0
  3
 ref|XP_754844.1| transcription elongation factor S-II [Aspergillus fumigatus Af293] >gnl|BL_ORD_ID|207 transcription elongation factor S-II [Aspergillus fumigatus Af293] Expect = 0.0
  4
 ref|XP_001270786.1| transcription elongation factor S-II [Aspergillus clavatus NRRL 1] >gnl|BL_ORD_D|4415 transcription elongation factor S-II [Aspergillus clavatus NRRL 1] Expect = 0.0
  5
 ref|XP_001209070.1| conserved hypothetical protein [Aspergillus terreus NIH2624] >gnl|BL_ORD_ID|669 conserved hypothetical protein [Aspergillus terreus NIH2624] Expect = 0.0
  6
 ref|XP_662465.1| hypothetical protein AN4861.2 [Aspergillus nidulans FGSC A4] >gnl|BL_ORD_ID|8155 hpothetical protein AN4861.2 [Aspergillus nidulans FGSC A4] Expect = 0.0
  7
 ref|XP_965694.1| hypothetical protein [Neurospora crassa OR74A] >gnl|BL_ORD_ID|5155 hypothetical prtein [Neurospora crassa] >gnl|BL_ORD_ID|5155 related to transcription elongation factor TFIIS [Neurospoa crassa] Expect = 0.0
  8
 ref|XP_001415130.1| hypothetical protein MGG_13511 [Magnaporthe grisea 70-15] >gnl|BL_ORD_ID|6572 hpothetical protein MGG_13511 [Magnaporthe grisea 70-15] Expect = 0.0
  9
 ref|NP_593623.1| hypothetical protein SPAC20H4.03c [Schizosaccharomyces pombe 972h-] >gnl|BL_ORD_ID1224 Transcription elongation factor S-II (TFIIS) >gnl|BL_ORD_ID|1224 transcription elongation factor TIIS [Schizosaccharomyces pombe] >gnl|BL_ORD_ID|1224 SPAC20H4.03c [Schizosaccharomyces pombe] Expect = 0.0
  10
 ref|NP_011472.1| Dst1p [Saccharomyces cerevisiae] >gnl|BL_ORD_ID|2805 Transcription elongation factr S-II (DNA strand transfer protein alpha) (STP-alpha) (DNA strand transferase 1) (Pyrimidine pathwa regulatory protein 2) >gnl|BL_ORD_ID|2805 Chain S, Rna Polymerase Ii-Tfiis Complex >gnl|BL_ORD_ID|2805 transcriptional elongation factor S-II [Saccharomyces cerevisiae] >gnl|BL_ORD_ID|2805 DST1 [Saccharomyces cerevisiae] Expect = 0.0

  homologs in Genbank gbpln and gbbct alignment
  more homologs in NCBI nr alignment

 EST contigs
  no hit found
 EST clones
  no hit found

 reference
  

    last updated 2007/07/20
comment and suggestions to : yamada@nrib.go.jp