Aspergillus oryzae RIB 40 Genome DB

AO080554000040

 gene name
  
 product   Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing
 CDS
  347 amino acids,   molecular mass 38968 Da show
  1044 nucleotides show
  with 2000-b promoter, 1000-b terminator region and intorn
 show
 contig
  SC120 complement(join(83657..84391, 84454..84634, 84701..84774, 84835..84888)) genbank
 Dogan ID
  AO090120000039 protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [Aspergillus oryzae Ace36] alignment
 paralogs  none

 motif
 no hit found detail
 localization
  95.7 %: nuclear
  4.3 %: mitochondrial
 		detail
 homologs  
  1
 AO090120000039 protein containing a U1-type Zn-finger and implicated in RNA splicing or processing Aspergillus oryzae Ace36] Expect = 0.0
 alignment
  2
 ref|XP_001388591.1| hypothetical protein An01g01500 [Aspergillus niger] >gnl|BL_ORD_ID|583 unnamed rotein product [Aspergillus niger] Expect = 0.0
  3
 ref|XP_748555.1| C2H2 finger domain protein (Kin17), putative [Aspergillus fumigatus Af293] >gnl|BLORD_ID|646 C2H2 finger domain protein (Kin17), putative [Aspergillus fumigatus Af293] Expect = 0.0
  4
 ref|XP_001273661.1| C2H2 finger domain protein (Kin17), putative [Aspergillus clavatus NRRL 1] >gnlBL_ORD_ID|5490 C2H2 finger domain protein (Kin17), putative [Aspergillus clavatus NRRL 1] Expect = 0.0
  5
 ref|XP_001216094.1| conserved hypothetical protein [Aspergillus terreus NIH2624] >gnl|BL_ORD_ID|75 onserved hypothetical protein [Aspergillus terreus NIH2624] Expect = 0.0
  6
 ref|XP_682629.1| hypothetical protein AN9360.2 [Aspergillus nidulans FGSC A4] >gnl|BL_ORD_ID|9176 hpothetical protein AN9360.2 [Aspergillus nidulans FGSC A4] Expect = 0.0
  7
 ref|XP_960598.1| hypothetical protein [Neurospora crassa OR74A] >gnl|BL_ORD_ID|4341 hypothetical prtein [Neurospora crassa] Expect = 0.0
  8
 ref|XP_370447.1| hypothetical protein MGG_06944 [Magnaporthe grisea 70-15] >gnl|BL_ORD_ID|4024 hypohetical protein MGG_06944 [Magnaporthe grisea 70-15] Expect = 0.0
  9
 ref|NP_596038.1| hypothetical protein SPBC365.09c [Schizosaccharomyces pombe 972h-] >gnl|BL_ORD_ID|629 SPBC365.09c [Schizosaccharomyces pombe] Expect = 0.0
  10
 ref|NP_014720.1| Basic zinc-finger protein, similar to human and mouse Kin17 proteins which are chrmatin-associated proteins involved in UV response and DNA replication [Saccharomyces cerevisiae] >gnl|BL_ORD_ID|384 Zinc finger protein RTS2 >gnl|BL_ORD_ID|3844 Rts2p >gnl|BL_ORD_ID|3844 RTS2 [Saccharomyces cerevisiae] >gnl|BL_ORD_ID|3844 YOR29-28 [Saccharomyces cerevisiae] Expect = 2.1E-27

  homologs in Genbank gbpln and gbbct alignment
  more homologs in NCBI nr alignment

 EST contigs
  no hit found
 EST clones
  no hit found

 reference
  

    last updated 2007/07/20
comment and suggestions to : yamada@nrib.go.jp