Aspergillus oryzae RIB 40 Genome DB

AO080554000080

 gene name
   tef1
 product   Translation elongation factor EF-1 alpha/Tu
 CDS
  460 amino acids,   molecular mass 50067 Da show
  1383 nucleotides show
  with 2000-b promoter, 1000-b terminator region and intorn
 show
 contig
  SC120 join(171661..171665, 171736..172004, 172068..173074, 173206..173307) genbank
 Dogan ID
  AO090120000080 translation elongation factor EF-1 alpha/Tu [Aspergillus oryzae Ace36] alignment
 paralogs  none

 motif
 IPR000795 Protein synthesis factor, GTP-binding
 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal
 IPR004161 Translation elongation factor EFTu/EF1A, domain 2
 IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal
 detail
 localization
  56.5 %: cytoplasmic
  17.4 %: mitochondrial
  8.7 %: vacuolar
  8.7 %: nuclear
  4.3 %: peroxisomal
  4.3 %: plasma membrane
 		detail
 homologs  
  1
 AO090120000080 translation elongation factor EF-1 alpha/Tu [Aspergillus oryzae Ace36] Expect = 0.0
 alignment
  2
 ref|XP_001398942.1| hypothetical protein An18g04840 [Aspergillus niger] >gnl|BL_ORD_ID|14199 unname protein product [Aspergillus niger] Expect = 0.0
  3
 ref|XP_750388.2| translation elongation factor EF-1 alpha subunit , putative [Aspergillus fumigatusAf293] >gnl|BL_ORD_ID|9223 translation elongation factor EF-1 alpha subunit , putative [Aspergillus fumigtus Af293] Expect = 0.0
  4
 ref|XP_001269546.1| translation elongation factor EF-1 alpha subunit , putative [Aspergillus clavats NRRL 1] >gnl|BL_ORD_ID|956 translation elongation factor EF-1 alpha subunit , putative [Aspergillu clavatus NRRL 1] Expect = 0.0
  5
 ref|XP_001212188.1| elongation factor 1-alpha [Aspergillus terreus NIH2624] >gnl|BL_ORD_ID|7420 elogation factor 1-alpha [Aspergillus terreus NIH2624] Expect = 0.0
  6
 ref|XP_661822.1| elongation factor 1-alpha [Aspergillus nidulans FGSC A4] >gnl|BL_ORD_ID|3705 EF1A_SPOR Elongation factor 1-alpha (EF-1-alpha) [Aspergillus nidulans FGSC A4] Expect = 0.0
  7
 sp|Q01372|EF1A_NEUCR Elongation factor 1-alpha (EF-1-alpha) >gnl|BL_ORD_ID|9893 translation elongaton factor eEF-1 alpha chain [Neurospora crassa] Expect = 0.0
  8
 ref|XP_361098.1| elongation factor 1-alpha [Magnaporthe grisea 70-15] >gnl|BL_ORD_ID|1358 elongatio factor 1-alpha-like protein [Magnaporthe grisea] >gnl|BL_ORD_ID|1358 elongation factor 1-alpha [Magnaporthe grisea 70-15] Expect = 0.0
  9
 ref|NP_595255.1| elongation factor 1 alpha [Schizosaccharomyces pombe 972h-] >gnl|BL_ORD_ID|2476 hyothetical protein SPAC23A1.10 [Schizosaccharomyces pombe 972h-] >gnl|BL_ORD_ID|2476 Elongation factor 1-alph-B/C (EF-1-alpha-B/C) >gnl|BL_ORD_ID|2476 elongation factor 1 alpha-B [Schizosaccharomyces pombe] >gnl|L_ORD_ID|2476 Expect = 0.0
  10
 ref|NP_009676.1| Tef2p [Saccharomyces cerevisiae] >gnl|BL_ORD_ID|2733 Tef1p [Saccharomyces cerevisie] >gnl|BL_ORD_ID|2733 Elongation factor 1-alpha (EF-1-alpha) (Translation elongation factor 1A) (Eukryotic elongation factor 1A) (eEF1A) >gnl|BL_ORD_ID|2733 Chain A, Crystal Structure Of The Yeast Elongatin Factor Complex Eef1a:eef1ba >gnl|BL_ORD_ID|2733 Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp gnl|BL_ORD_ID|2733 Chain A, Nucleotide Exchange Intermediates In The Eef1a-Eef1ba Complex >gnl|BL_ORD_ID|2733 Chain A Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex >gnl|BL_ORD_ID|2733 Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a Mutant In Complex With Eef1a And Gdp >gnl|BL_ORD_ID|2733 Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a Mutant In Complex With Eef1a >gnl|BL_ORD_ID|2733 unnamed protein product [Saccharomyces cerevisiae] >gnl|BL_ORD_ID|2733 unnamed protein product [Saccharomyces cerevisiae] >gnl|BL_ORD_ID|2733 EF-1-aplha >gnl|BL_ORD_ID|2733 elongation factor 1-alpha >gnl|BL_ORD_ID|2733 EF-1-alpha >gnl|BL_ORD_ID|2733 elongation factor EF-1-alpha [Saccharomyces cerevisiae] >gnl|BL_ORD_ID|2733 TEF2 [Saccharomyces cerevisiae] >gnl|BL_ORD_ID|2733 Tef1p: Elongation factor 1-alpha [Saccharomyces cerevisiae] >gnl|BL_ORD_ID|2733 YPR080W [Saccharomyces cerevisiae] Expect = 0.0

  homologs in Genbank gbpln and gbbct alignment
  more homologs in NCBI nr alignment

 EST contigs
  AoEST03193   AoEST05021   AoEST04323 alignment
 EST clones
 HG5013  HG7206  HG5014  HG5102  HG6096  SC1236  SC1214  HG3171  HG5022  SC1352 and more... alignment

 reference
   Kitamoto,N., et al. , Utilization of the TEF1-alpha gene (TEF1) promoter for expression of polygalacturonase genes, pgaA and pgaB, in Aspergillus oryzae, Appl. Microbiol. Biotechnol. 50 (1), 85-92 (1998)

    last updated 2007/07/20
comment and suggestions to : yamada@nrib.go.jp