Aspergillus oryzae RIB 40 Genome DB

AO080567000057

 gene name
  
 product   RRM domain
 CDS
  477 amino acids,   molecular mass 51722 Da show
  1434 nucleotides show
  with 2000-b promoter, 1000-b terminator region and intorn
 show
 contig
  SC171 join(141273..141650, 141726..141830, 141887..142534, 142588..142720, 142780..142949) genbank
 Dogan ID
  AO090001000353 RRM domain [Aspergillus oryzae Ace36] alignment
 paralogs  none

 motif
 IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
 IPR003954 RNA recognition, region 1
 IPR012677 Nucleotide-binding, alpha-beta plait
 detail
 localization
  56.5 %: nuclear
  21.7 %: mitochondrial
  13.0 %: cytoplasmic
  8.7 %: peroxisomal
 		detail
 homologs  
  1
 AO090001000353 RRM domain [Aspergillus oryzae Ace36] Expect = 0.0
 alignment
  2
 ref|XP_001392545.1| hypothetical protein An08g04280 [Aspergillus niger] >gnl|BL_ORD_ID|6803 unnamedprotein product [Aspergillus niger] Expect = 0.0
  3
 emb|CAE47924.1| oligouridylate binding protein, putative [Aspergillus fumigatus] Expect = 0.0
  4
 ref|XP_001269070.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1 [Aspergillus clvatus NRRL 1] >gnl|BL_ORD_ID|1083 nuclear and cytoplasmic polyadenylated RNA-binding protein pub1 [Asperillus clavatus NRRL 1] Expect = 0.0
  5
 ref|XP_001210484.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624] >gnl|BL_ORD_ID|614 hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624] Expect = 0.0
  6
 ref|XP_658695.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4] >gnl|BL_ORD_ID|6142 hpothetical protein AN1091.2 [Aspergillus nidulans FGSC A4] Expect = 0.0
  7
 ref|XP_962723.1| hypothetical protein [Neurospora crassa OR74A] >gnl|BL_ORD_ID|7843 hypothetical prtein [Neurospora crassa] Expect = 0.0
  8
 ref|XP_369885.1| hypothetical protein MGG_06400 [Magnaporthe grisea 70-15] >gnl|BL_ORD_ID|4874 hypohetical protein MGG_06400 [Magnaporthe grisea 70-15] Expect = 0.0
  9
 ref|NP_594243.1| hypothetical protein SPAC17A2.09c [Schizosaccharomyces pombe 972h-] >gnl|BL_ORD_ID3707 RNA-binding post-transcriptional regulator csx1 >gnl|BL_ORD_ID|3707 SPAC17A2.09c [Schizosaccharomyes pombe] Expect = 1.0E-27
  10
 ref|NP_014382.1| Poly(A)+ RNA-binding protein, abundant mRNP-component protein that binds mRNA and s required for stability of a number of mRNAs; not reported to associate with polyribosomes [Saccharmyces cerevisiae] >gnl|BL_ORD_ID|8719 PUB1 [Saccharomyces cerevisiae] Expect = 0.0

  homologs in Genbank gbpln and gbbct alignment
  more homologs in NCBI nr alignment

 EST contigs
  AoEST04741   AoEST05262   AoEST02029 alignment
 EST clones
 TH1805  JZ8875  JK0548 alignment

 reference
  

    last updated 2007/07/20
comment and suggestions to : yamada@nrib.go.jp