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<TITLE> PSORT II server </TITLE>
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<H1>Input Sequence</H1>
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AO080533000200 (102 aa) Predicted protein

MLRIAVVIKW FKEARTGDLQ HIRSVLRQDP YNSGPGNDAA KLQAFSFFKN
RLAPRMTSRK MNSSPAVLSA QPDKGEQRER QTMGKEDDFT NGNTGICMCF
SG

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<H1>Results of Subprograms</H1>

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<A HREF="helpwww2.html#esig">PSG:  a new signal peptide prediction method</A>
      N-region:  length 9;  pos.chg 2;  neg.chg 0
      H-region:  length 2;  peak value -10.41
      PSG score: -14.81

<A HREF="helpwww2.html#esig">GvH:  von Heijne's method for signal seq. recognition</A>
      GvH score (threshold: -2.1):  -7.48
      possible cleavage site: between 16 and 17

>>> Seems to have no N-terminal signal peptide

<A HREF="helpwww2.html#ealom">ALOM: Klein et al's method for TM region allocation</A>
      Init position for calculation: 1
      Tentative number of TMS(s) for the threshold  0.5:   0
      number of TMS(s) .. fixed
      PERIPHERAL  Likelihood = 10.45 (at 1)
      ALOM score:  10.45  (number of TMSs: 0)

<A HREF="helpwww2.html#mit">MITDISC: discrimination of mitochondrial targeting seq</A>
      R content:       2       Hyd Moment(75):  6.92
      Hyd Moment(95):  8.39    G content:       1
      D/E content:     2       S/T content:     1
      Score: -5.02

<A HREF="helpwww2.html#mit">Gavel: prediction of cleavage sites for mitochondrial preseq</A>
      R-2 motif at 13  LRI|AV

<A HREF="helpwww2.html#nuc">NUCDISC: discrimination of nuclear localization signals</A>
      pat4: none
      pat7: none
      bipartite: none
      content of basic residues:  15.7%
      NLS Score: -0.47

<A HREF="helpwww2.html#er">KDEL</A>: ER retention motif in the C-terminus: none

<A HREF="helpwww2.html#er">ER Membrane Retention Signals:</A> 
      XXRR-like motif in the N-terminus: LRIA

none

<A HREF="helpwww2.html#pox">SKL</A>: peroxisomal targeting signal in the C-terminus: none

<A HREF="helpwww2.html#pox">SKL2</A>: 2nd peroxisomal targeting signal:  none

<A HREF="helpwww2.html#lys">VAC</A>: possible vacuolar targeting motif: none

<A HREF="helpwww2.html#nuc">RNA-binding motif:</A> none

<A HREF="helpwww2.html#motif">Actinin-type actin-binding motif:</A>
      type 1: none
      type 2: none

<A HREF="helpwww2.html#anc">NMYR</A>: N-myristoylation pattern : none

<A HREF="helpwww2.html#anc">Prenylation motif:</A> none

<A HREF="helpwww2.html#ves">memYQRL</A>: transport motif from cell surface to Golgi: none

<A HREF="helpwww2.html#motif">Tyrosines in the tail:</A> none

<A HREF="helpwww2.html#motif">Dileucine motif in the tail:</A> none

<A HREF="helpwww2.html#motif">checking 63 PROSITE DNA binding motifs:</A>  none

<A HREF="helpwww2.html#motif">checking 71 PROSITE ribosomal protein motifs:</A>  none

<A HREF="helpwww2.html#motif">checking 33 PROSITE prokaryotic DNA binding motifs:</A>  none

<A HREF="helpwww2.html#nncn">NNCN: Reinhardt's method for Cytplasmic/Nuclear discrimination</A>
      Prediction: nuclear
      Reliability: 94.1

<A HREF="helpwww2.html#lupas">COIL: Lupas's algorithm to detect coiled-coil regions
</A>      total: 0 residues 

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<A HREF="helpwww2.html#note"><H1>Results of the <i>k</i>-NN Prediction</H1></A>
<i>k</i> = 9/23

<PRE>
	 56.5 %: nuclear
	 43.5 %: mitochondrial

>> prediction for AO080533000200 is nuc (k=23)

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